PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA029759-PA
Common NameOsI_31377
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 414aa    MW: 40656.5 Da    PI: 7.1508
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA029759-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.15.6e-12170215555
                       HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       h+++Er RR+ri +++  L+el+P+a      K +Ka++L + ++Y+k Lq
  BGIOSGA029759-PA 170 HSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 215
                       99***********************8.....6******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.36E-12163219No hitNo description
SuperFamilySSF474592.62E-16163225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.39165214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-15167220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.7E-9170215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.0E-14171220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048767Biological Processroot hair elongation
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
MAAAAAAGQI SLDDLRNGGG VAANAGGGGG GVHDDFLDQM LSSLPPSAWP DLAAGKAAED  60
DAEGMHHHHH HHHQQFGGPY DESAMLASRL RQHQISGGGG GGGGGAAAVK QMTAPTIPTQ  120
SFGGGGGGGG GGTASGGGAA QPQAGAAGGG APAPPRQRVR ARRGQATDPH SIAERLRRER  180
IAERMKALQE LVPNANKTDK ASMLDEIIDY VKFLQLQVKA STYTKLLIHV LSMSRLGGAA  240
AVAPLVADMS SEGRGGGAAN GGAPAAAAAA AAAGSDSLTV TEQQVAKLME EDMGTAMQYL  300
QGKGLCLMPI SLASAISSAT CHLRPPVVAA AAAQQFPAGL GAAAAAAHHH QLSAAAAAAA  360
AMRGHLPGLN ADGSVPASPS MSVLTAQSAM ANGGGGAADG EGSQLKDAAS VSKP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1174179RLRRER
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.596580.0leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126170.0CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015610785.11e-116PREDICTED: transcription factor UNE12 isoform X2
SwissprotQ9ZUG93e-80BH066_ARATH; Transcription factor bHLH66
TrEMBLB8BF900.0B8BF90_ORYSI; Putative uncharacterized protein
STRINGBGIOSGA029759-PA0.0(Oryza sativa Indica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141937118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24260.14e-48LJRHL1-like 1